2012 reputation rank | 2011 reputation rank | University | Country | 2011-12 World University Rankings position | |
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| 1 | 1 | Harvard University | United States | 2 |
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| 2 | 2 | Massachusetts Institute of Technology | United States | 7 |
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| 3 | 3 | University of Cambridge | United Kingdom | 6 |
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| 4 | 5 | Stanford University | United States | 2 |
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| 5 | 4 | University of California, Berkeley | United States | 10 |
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| 6 | 6 | University of Oxford | United Kingdom | 4 |
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| 7 | 7 | Princeton University | United States | 5 |
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| 8 | 8 | University of Tokyo | Japan | 30 |
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| 9 | 12 | University of California, Los Angeles | United States | 13 |
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| 10 | 9 | Yale University | United States | 11 |
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| 11 | 10 | California Institute of Technology | United States | 1 |
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| 12 | 13 | University of Michigan | United States | 18 |
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| 13 | 11 | Imperial College London | United Kingdom | 8 |
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| 14 | 15 | University of Chicago | United States | 9 |
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| 15 | 23 | Columbia University | United States | 12 |
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| 16 | 16 | Cornell University | United States | 20 |
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| 16 | 17 | University of Toronto | Canada | 19 |
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| 18 | 14 | Johns Hopkins University | United States | 14 |
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| 19 | 22 | University of Pennsylvania | United States | 16 |
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| 20 | 18 | Kyoto University | Japan | 52 |
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| 21 | 19 | University College London | United Kingdom | 17 |
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| 22 | 24 | Swiss Federal Institute of Technology Zürich | Switzerland | 15 |
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| 23 | 21 | University of Illinois at Urbana Champaign | United States | 31 |
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| 23 | 27 | National University of Singapore | Singapore | 40 |
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| 25 | 31 | University of British Columbia | Canada | 22 |
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| 25 | 29 | McGill University | Canada | 28 |
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| 27 | 25 | University of Wisconsin-Madison | United States | 27 |
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| 28 | 26 | University of Washington | United States | 25 |
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| 29 | 37 | London School of Economics and Political Science | United Kingdom | 47 |
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| 30 | 35 | Tsinghua University | China | 71 |
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| 31 | 34 | University of California, San Francisco | United States | #N/A |
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| 32 | 31 | University of Texas at Austin | United States | 29 |
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| 33 | 36 | Duke University | United States | 22 |
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| 34 | 51-60 | New York University | United States | 44 |
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| 35 | 40 | Northwestern University | United States | 26 |
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| 36 | 30 | University of California, San Diego | United States | 33 |
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| 37 | 28 | Carnegie Mellon University | United States | 21 |
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| 38 | 43 | Peking University | China | 49 |
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| 39 | 42 | The University of Hong Kong | Hong Kong | 34 |
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| 39 | 19 | University of Massachusetts | United States | 64 |
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| 41 | 39 | Georgia Institute of Technology | United States | 24 |
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| 42 | 48 | Ludwig-Maximilians-Universität München | Germany | 45 |
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| 43 | 45 | University of Melbourne | Australia | 37 |
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| 44 | 51-60 | Australian National University | Australia | 38 |
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| 44 | 38 | University of California, Davis | United States | 38 |
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| 46 | 41 | University of North Carolina at Chapel Hill | United States | 43 |
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| 47 | 43 | University of Minnesota | United States | 42 |
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| 47 | 47 | Purdue University | United States | 98 |
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| 49 | 45 | University of Edinburgh | United Kingdom | 36 |
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| 50 | 51-60 | The University of Sydney | Australia | 58 |
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| 51-60 | 49 | Delft University of Technology | Netherlands | 104 |
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| 51-60 | 51-60 | Karolinska Institute | Sweden | 32 |
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| 51-60 | 61-70 | University of Manchester | United Kingdom | 48 |
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| 51-60 | 51-60 | The Ohio State University | United States | 57 |
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| 51-60 | 50 | Osaka University | Japan | 119 |
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| 51-60 | 61-70 | Pennsylvania State University | United States | 51 |
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| 51-60 | 51-60 | University of California, Santa Barbara | United States | 35 |
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| 51-60 | 51-60 | Seoul National University | Korea, Republic of | 124 |
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| 51-60 | 51-60 | Tohoku University | Japan | 120 |
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| 51-60 | 51-60 | Tokyo Institute of Technology | Japan | 108 |
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| 61-70 | 71-80 | École Polytechnique Fédérale de Lausanne | Switzerland | 46 |
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| 61-70 | #N/A | Hebrew University of Jerusalem | Israel | 121 |
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| 61-70 | 91-100 | The Hong Kong University of Science and Technology | Hong Kong | 62 |
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| 61-70 | 71-80 | Humboldt-Universität zu Berlin | Germany | 109 |
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| 61-70 | 61-70 | King's College London | United Kingdom | 56 |
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| 61-70 | 61-70 | Technische Universität München | Germany | 88 |
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| 61-70 | 51-60 | University of Pittsburgh | United States | 59 |
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| 61-70 | #N/A | University of São Paulo | Brazil | 178 |
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| 61-70 | 71-80 | University of Southern California | United States | 55 |
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| 61-70 | 81-90 | National Taiwan University | Taiwan | 154 |
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| 71-80 | 81-90 | University of Amsterdam | Netherlands | 92 |
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| 71-80 | 81-90 | Universität Heidelberg | Germany | 73 |
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| 71-80 | 71-80 | Michigan State University | United States | 96 |
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| 71-80 | #N/A | Université Paris-Sorbonne | France | #N/A |
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| 71-80 | 81-90 | The University of Queensland Australia | Australia | 74 |
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| 71-80 | 81-90 | Texas A&M University | United States | 164 |
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| 71-80 | 61-70 | Uppsala University | Sweden | 87 |
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| 71-80 | 71-80 | Utrecht University | Netherlands | 68 |
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| 71-80 | 71-80 | Washington University in St Louis | United States | 41 |
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| 71-80 | 61-70 | University of Zürich | Switzerland | 61 |
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| 81-90 | #N/A | Brown University | United States | 49 |
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| 81-90 | #N/A | The Chinese University of Hong Kong | Hong Kong | 151 |
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| 81-90 | 61-70 | University of Florida | United States | 125 |
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| 81-90 | 81-90 | Katholieke Universiteit Leuven | Belgium | 67 |
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| 81-90 | 91-100 | Korea Advanced Institute of Science and Technology | Korea, Republic of | 94 |
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| 81-90 | 81-90 | University of Leeds | United Kingdom | 133 |
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| 81-90 | 81-90 | Leiden University | Netherlands | 79 |
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| 81-90 | 71-80 | Lund University | Sweden | 80 |
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| 81-90 | 91-100 | Nanyang Technological University | Singapore | 169 |
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| 81-90 | #N/A | Tel Aviv University | Israel | 166 |
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| 91-100 | 71-80 | University of Arizona | United States | 97 |
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| 91-100 | 61-70 | Boston University | United States | 54 |
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| 91-100 | 81-90 | University of Bristol | United Kingdom | 66 |
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| 91-100 | 61-70 | École Polytechnique | France | 63 |
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| 91-100 | 81-90 | Indiana University | United States | 123 |
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| 91-100 | #N/A | Middle East Technical University | Turkey | 276-300 |
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| 91-100 | #N/A | Université Paris-Sud | France | #N/A |
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| 91-100 | #N/A | Université Pierre et Marie Curie | France | 84 |
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| 91-100 | 71-80 | Rutgers, The State University of New Jersey | United States | 81 |
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| 91-100 | #N/A | Wageningen University and Research Center | Netherlands | 75 |
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